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bigsnpr
1.12.16
Manual
Vignettes
Quick demo
Exercise
Why clumping should be preferred over pruning
How to capture Population Structure with PCA (LD problem explained)
How to capture Population Structure with PCA (directly on PLINK bed files)
Ancestry proportions and ancestry grouping
Computing polygenic scores using Stacked Clumping and Thresholding (SCT)
Polygenic scores and inference using LDpred2
Estimating uncertainty in polygenic scores using LDpred2
About
Articles
All vignettes
Ancestry proportions and ancestry grouping
Demonstration of packages bigsnpr and bigstatsr
Exercises using packages bigsnpr and bigstatsr
Polygenic scores and inference using LDpred2
Estimating uncertainty in polygenic scores using LDpred2
Why clumping should be preferred over pruning
Computing polygenic scores using Stacked Clumping and Thresholding (SCT)