Minor Allele Frequency.
snp_MAF( G, ind.row = rows_along(G), ind.col = cols_along(G), nploidy = 2, ncores = 1 )
G | A FBM.code256
(typically |
---|---|
ind.row | An optional vector of the row indices (individuals) that
are used. If not specified, all rows are used. |
ind.col | An optional vector of the column indices (SNPs) that are used.
If not specified, all columns are used. |
nploidy | Number of trials, parameter of the binomial distribution.
Default is |
ncores | Number of cores used. Default doesn't use parallelism. You may use nb_cores. |
A vector of MAFs, corresponding to ind.col
.
#> num [1:4542] 0.342 0.206 0.237 0.185 0.456 ...