Imputation using Beagle version 4.

snp_beagleImpute(
beagle.path,
bedfile.in,
bedfile.out = NULL,
memory.max = 3,
ncores = 1,
extra.options = "",
verbose = TRUE
)

## Arguments

beagle.path Path to the executable of Beagle v4+. Path to the executable of PLINK 1.9. Path to the input bedfile. Path to the output bedfile. Default is created by appending "_impute" to prefix.in (bedfile.in without extension). Max memory (in GB) to be used. It is internally rounded to be an integer. Default is 3. Number of cores used. Default doesn't use parallelism. You may use nb_cores. Other options to be passed to Beagle as a string. More options can be found at Beagle's website. Other options to be passed to PLINK as a string. More options can be found at http://www.cog-genomics.org/plink2/filter. Whether to show PLINK log? Default is TRUE.

## Value

The path of the new bedfile.