Modify the physical position information of a data frame when converting genome build using executable liftOver.
snp_modifyBuild( info_snp, liftOver, from = "hg18", to = "hg19", check_reverse = TRUE )
A data frame with columns "chr" and "pos".
Path to liftOver executable. Binaries can be downloaded at https://hgdownload.cse.ucsc.edu/admin/exe/macOSX.x86_64/liftOver for Mac and at https://hgdownload.cse.ucsc.edu/admin/exe/linux.x86_64/liftOver for Linux.
Genome build to convert from. Default is
Genome build to convert to. Default is
Whether to discard positions for which we cannot go back
to initial values by doing 'from -> to -> from'. Default is
Input data frame
info_snp with column "pos" in the new build.
Hinrichs, Angela S., et al. "The UCSC genome browser database: update 2006." Nucleic acids research 34.suppl_1 (2006): D590-D598.